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Methodology

Germination & Dormancy testing

Germination Defined

Author: Dr. Riad Z. Baalbaki
A clear definition of germination is a prerequisite to correctly interpreting reported tests results.

Many definitions of seed germination are in current usage, and it is important to understand the meaning of each. The so-called “physiological definition” defines germination as the emergence of the radicle through the seed coat. More precisely, the sequence of interrelated catabolic and anabolic events, triggered by seed hydration under a favorable germination environment, that lead to initiation of embryo growth in a previously quiescent seed. In contrast, a seed analyst would define germination as emergence and development from the seed embryo of those essential structures which are indicative of the ability to produce a normal plant under favorable conditions (AOSA, 2019).

Official seed testing rules use the latter definition, and percentage germination results reflect only the number of normal seedlings. A somewhat hybrid application of both definitions is often used when evaluating seed germination of native species with no official testing rules.

In that case, a seed whose radicle has emerged is considered as germinated and removed from the test before significant seedling development, but seedlings with abnormal development apparent at this early stage are not included in percentage germination results. For most species, this means that absence of or abnormal radicle development are the only seedling evaluation criteria (KEW's Testing Procedures: 13a-Germination-testing-procedures.pdf). When considering germinating test results, knowledge of what definition was used is essential for correctly interpreting and replicating such results.

It should be noted that the term “germination” can apply to a single seed as well as a seed lot. When describing germination of a single seed, reference is made to physical, physiological, biochemical and molecular events taking place within that seed. In contrast, seed testing laboratories approach germination as a seed lot measure, specifically, a determination of a seed lot’s capacity to germinate.

The Germination Process: Seed-Based Events during Germination

Seed-based events can best be understood by superimposing their timing with the known triphasic pattern of water uptake by seeds. The first phase, or Phase I, involves passive water uptake and physical process of water absorption from a wet environment. In Phase II, there is no net water uptake. This is a period where all the water that can be absorbed by physical forces has been taken up; the seed is undergoing changes but as yet has no active mechanism to take up water. Phase III is the phase of active water uptake by the newly emerged radicle. This phase, strictly speaking, is post-germination. Each of these phases is associated with unique seed events. For seeds of poorly studied species, such as many wild and native species, understanding the timing and impact of these events is essential for correct interpretation of seed behavior and test results.

The Standard Germination Test: Applicability to Native Species

Regardless of the testing rules used (AOSA, ISTA, FSA or CMP), the aim of germination testing is to estimate the maximum number of seeds that will produce normal seedlings under optimum conditions. The ability to produce normal seedlings in the field, and the adjustment of planting densities based on test results, is the first requirement for producing uniform stands at the time of harvest. While uniform stands for cultivated agricultural, vegetable and flower species are an important concern, the same may not be true for native and wild species, many of which are never harvested. How, then, should natives and wild species be tested for germination? Under all existing rules, germination tests have three components: standardization, absolute requirement for normal development of essential structures, and testing under empirically proven favorable conditions. What components of a germination test should apply to testing natives?

For species without rules, a satisfactory level of standardization can be achieved by limiting the choice of media to one or two, listing a single temperature regime, prescribing light during testing (with exceptions), and recommending 4 weeks per test, with the option of terminating early (see following section). Germination can be determined based on radicle emergence, but seedlings with abnormal development apparent at this early stage would be considered as abnormal. All of the above should be considered as preliminary, and validation tests are needed for developing rules for each species.

Of special importance is the need to address the issue of dormancy. Should dormancy breaking technique be used? Scarification might be necessary since many hard seeds might not be viable. Dormancy breaking treatments must be clearly defined for each type of dormancy. There are two common classifications of dormancy types. The first is by Baskin and Baskin (2004), and the other by Bonner (1984). Refer to Baskin’s Seed Dormancy Classification of varying plant families.

Seedling Evaluation (For species without rules)

Following the analysts’ definition of germination, seedlings with intact or slightly defective essential structures, indicative of the ability to produce a normal plant under favorable conditions, are to be classified as normal. Seedling abnormalities can be due to many causes, and specific criteria for evaluating seedlings are included for each family (see section xxx for germination rules and seedling evaluation criteria). However, the following criteria should be regarded as benchmarks for seedling classifications, especially when evaluation criteria are being developed for previously uncategorized species. Significant defects of essential structures can be separated into either root or shoot problems. In general, injury to photosynthetic tissue will have a significant impact on early seedling growth; before development of photosynthetic tissue, loss of food reserves will have a profound negative impact on seedling survival. In the absence of root development, no sustained seedling growth is possible, and late development of roots can decrease the survival chances of a seedling under field conditions. It should also be noted that abnormal growth patterns can be the result of seed position on/in substrate or the nature of substrate.

Criteria for Seedling Evaluation

As mentioned above, while specific evaluation criteria are included for each family, a list of general criteria is needed for developing appropriate evaluation standards relevant to each family/species. For the criteria listed below, an answer of ‘Yes’ implies that the seedling in question has a low chance of survival in the field, and should be classified as abnormal. While not every criterion is relevant to all growth habits and plant types, two fundamental questions apply to all species: was enough functional root mass produced, and is the seedling likely to become autotrophic?

Was enough functional root mass produced?

  • Weak, stubby or missing primary root with weak secondary or adventitious roots?
  • Main root split extending into the hypocotyl, with no secondary roots?
  • Less than one strong seminal root?
  • Most root mass decayed as a result of primary infection?
  • Glassy or spindly roots?
  • Root shows negative geotropism?

Is seedling likely to become autotrophic?

  • Is photosynthetic apparatus significantly damaged or impaired?
  • Does seed/seedling have enough reserves that can be utilized to reach the autotrophic stage?
  • Is less than half of the original cotyledon tissue remaining attached?
  • Is less than half of the original cotyledon tissue free of necrosis or decay?
  • Is the epicotyl missing or damaged?
  • Are there deep open cracks in the hypocotyl extending into the conducting tissue?
  • Are less than half of the first leaves attached and free of decay?
  • Is this an albino seedling?
  • Is the seedling decayed as a result of primary infection?
  • Is seedling glassy or spindly?
  • Is the endosperm detached and seedling growth retarded?
  • Is the coleoptile missing?
  • Is point of attachment of cotyledons to seedling axis decayed?

seed, seeds

  • Seed. The part of a plant which is able to develop into a new plant. ISTA Handbook on Pure Seed Definitions, Glossary. 3rd Edition 2010

  • Seed. Botanically, a seed is a mature fertilized ovule containing an embryonic plant; usually it has nutrient storage tissue and is surrounded by a protective coat, the testa. This structure is a "true seed"; however, the ovules of many species have additional structures of the mother plant attached or fused to the seed coat. For example, the "seed" of Triticum aestivum (wheat) is botanically a fruit because the pericarp (ovary wall) is fused with the seed coat. In these rules the term "seed" will be used in the agronomic sense (i.e. the true seed plus any accessory structures that may be attached when it is planted in the field; see section 3.2 of the AOSA Rules for Testing Seeds Vol. 1). Association of Official Seed Analysts (AOSA) Rules for Seed Testing, Volume 4, 2019

  • Seed. The ripened ovule, enclosing the rudimentary plant and food necessary for its germination. Fenwick, J.R. revised 1995. Laboratory Manual for General Crops- Glossary. Unpublished class notes. Dept. of Soil and Crop Sciences, Colorado State University. Pages 104-111

germination

  • Germination. Germination of a seed in an ISTA test is the emergence and development of the seedling to a stage where the aspect of its essential structures indicates whether or not it is able to develop further into a satisfactory plant under favourable conditions in the field. 2020 International Rules for Seed Testing, (ISTA)

  • Germination (seed testing definition).The emergence and development from the seed embryo of those essential structures which, for the kind of seed in question, are indicative of its ability to produce a normal plant under favorable conditions. Association of Official Seed Analysts (AOSA) Rules for Seed Testing, Volume 1, 2019

  • Germination (physiological definition). A process involving water uptake, metabolic changes and cell elongation resulting in radicle emergence from the seed. SCST Seed Technologist Training Manual, 2018

radicle, radicles

  • Radicle. The initial root of the embryo, which develops into the primary root after emergence through the testa during germination. ISTA Handbook of Pure Seed Definitions, Glossary, 3rd Edition, 2010

  • Radicle. The part of an embro giving rise to the root system of a plant. Compare to plumule. SCST Seed Technologist Training Manual, 2018

  • Radicle. The lower portion of the hypocotyl which grows into the primary root. Fenwick, J.R. revised 1995. Laboratory Manual for General Crops- Glossary. Unpublished class notes. Dept. of Soil and Crop Sciences, Colorado State University. Pages 104-111

  •  Radicles. Spring from the root; clustered at the base of the stem. TWS

hydration

  • Hydration. The act of becoming chemically combined with water. SCST Seed Technologist Training Manual, 2018

embryo, embryos

  • Embryo. The young plant enclosed in a seed. 2020 International Rules for Seed Testing (ISTA)

  • Embryo. Rudimentary plant enclosed in a seed, usually consisting of a more or less differentiated axis and attached cotyledon(s). ISTA Handbook on Pure Seed Definitions, Glossary. 3rd Edition 2010

  • The embryo. The product of one of the fusions of the angiosperm fertilization process is the embryo (the other being the endosperm). In gymnosperms the embryo is the only product of the fertilization process. Depending on the species, the embryo develops to varying degrees within the seed, becoming a 'miniature plant' by the end of the growing season. In Phaseolus vulgaris, for example, the embryo is fully developed and the radicle, hypocotyl and epicotyl with primary leaves can easily be observed. The development of the embryo in other species may be much less, with some essential structures being observed only after considerable growth of the seedling. Association of Official Seed Analysts (AOSA) Rules for Seed Testing, Volume 4, 2019

  • Embryo. A young plant before the beginning if its rapid growth. Fenwick, J.R. revised 1995. Laboratory Manual for General Crops- Glossary. Unpublished class notes. Dept. of Soil and Crop Sciences, Colorado State University. Pages 104-111

essential structure, essential structures

  • Essential structure. Structure which is critical for continued development of the seedling into a plant. SCST Seed Technologist Training Manual. 2018

  • Essential structure. Any seedling structure that must be considered when classifying a seedling as either normal or abnormal. In general, an essential structure is one that is critical for successful establishment and development of a seedling into a plant. Structure which is critical for continued development of the seedling into a plant. Baalbaki, R.Z. Germination & Dormancy. TWS Website. 2020

normal seedling, normal

  • Normal seedling. A seedling with all essential structures present and capable of developing into a plant under favorable conditions; certain defects may be present if they are judged to be not so severe as to impede further development of the plant (see abnormal seedling). Association of Official Seed Analysts (AOSA) Rules for Seed Testing, Volume 4, 2019

AOSA

International Rules for Seed Testing

seedling, seedlings

  • Seedling. A young plant developing from the embryo of a seed. Association of Official Seed Analysts (AOSA) Rules for Seed Testing, Volume 4, 2019

species

  • Species. A category of classification lower than a genus that is made up of plants which possess in common distinctive characteristics that are reproduced in their offspring. The species name included second to the genus in the scientific binomial. Fenwick, J.R. revised 1995. Laboratory Manual for General Crops- Glossary. Unpublished class notes. Dept. of Soil and Crop Sciences, Colorado State University. Pages 104-111

seedling, seedlings

  • Seedling. A young plant developing from the embryo of a seed. Association of Official Seed Analysts (AOSA) Rules for Seed Testing, Volume 4, 2019

abnormal seedling, abnormal

  • Abnormal seedling. A seedling that does not have all the essential structures or is damaged, deformed or decayed to such an extent that normal development is prevented (see normal seedling). Association of Official Seed Analysts (AOSA) Rules for Seed Testing, Volume 4, 2019

seed lot

  • Seed lot. A seed lot is a specified quantity of seed that is physically and uniquely identified. 2020 International Rules for Seed Testing, (ISTA)

  • Lot of seed. The  term "lot of seed" means a definite quantity of seed identified by a number, every portion or bag which is uniform, within permitted tolerances, for the factors which appear in the labeling. Agricultural Marketing Service, USDA. Federal Seed Act, Part 201. Federal Seed Act Regulations. 201.2 Terms Defined. Current as of May 21, 2020.

seed, seeds

  • Seed. The part of a plant which is able to develop into a new plant. ISTA Handbook on Pure Seed Definitions, Glossary. 3rd Edition 2010

  • Seed. Botanically, a seed is a mature fertilized ovule containing an embryonic plant; usually it has nutrient storage tissue and is surrounded by a protective coat, the testa. This structure is a "true seed"; however, the ovules of many species have additional structures of the mother plant attached or fused to the seed coat. For example, the "seed" of Triticum aestivum (wheat) is botanically a fruit because the pericarp (ovary wall) is fused with the seed coat. In these rules the term "seed" will be used in the agronomic sense (i.e. the true seed plus any accessory structures that may be attached when it is planted in the field; see section 3.2 of the AOSA Rules for Testing Seeds Vol. 1). Association of Official Seed Analysts (AOSA) Rules for Seed Testing, Volume 4, 2019

  • Seed. The ripened ovule, enclosing the rudimentary plant and food necessary for its germination. Fenwick, J.R. revised 1995. Laboratory Manual for General Crops- Glossary. Unpublished class notes. Dept. of Soil and Crop Sciences, Colorado State University. Pages 104-111

ISTA

International Rules for Seed Testing

dormant seeds, dormancy

  • Dormant seeds. Viable seeds, other than hard seeds, which fail to germinate when provided the specified germination conditions for the kind of seed in question. Association of Official Seed Analysts (AOSA) Rules for Seed Testing, Volume 4, 2019

  • Dormancy. Delayed germination or growth; a condition of inactivity. SCST Seed Technologist Training Manual, 2018

scarification

  • Scarification. The process of mechanically or chemically abrading a seed coat to make it more permeable to water and gases. SCST Seed Technologist Training Manual, 2018 

hard seed, hard seeds

  • Hard seed. Seeds which remain hard at the end of the prescribed test period because they have not absorbed water due to an impermeable seed coat. Association of Official Seed Analysts (AOSA) Rules for Seed Testing, Volume 1, 2019

viable

  • Viable. Alive. Seed viability indicates that a seed contains structures and substances including enzyme systems that give it the capacity to germinate under favorable conditions in the absence of dormancy.  SCST Seed Technologist Training Manual, 2018 

root, roots

  • Root. In dicotyledons and gymnosperms, the root system serves three major functions: (1) to anchor the plant in the soil, (2) to absorb water and dissolved salts from the soil and (3) to conduct the water and salts to the hypocotyl, cotyledons and epicotyl. The embryonic root, or radicle, is located at the basal end of the embryo and is usually the first seedling structure to rupture the testa. After emergence it is referred to as the primary root. The primary root elongates rapidly and soon numerous root hairs develop, greatly increasing the absorbing surface of the roots. As the seedling continues to grow, secondary roots develop from the primary root and from other secondary roots. Roots may also emerge from other structures (e.g. the hypocotyl) and are referred to as adventitious roots. As in the dicotyledons, the monocotyledon root system serves to anchor the plant in soil, absorb water and dissolved salts from the soil and to conduct the water and salts to the growing seedling. The embryonic root, or radicle, is situated at the basal end of the embryo and, in the case of the Poaceae, its apex is covered by the coleorhiza. After the radicle emerges it is referred to as the primary root. In some species of the Poaceae (e.g. Triticum) the primary root is indistinguishable from the other roots that develop from the scutellar node region and hence all of these are referred to as seminal roots. Roots that develop from structures above the scutellar or cotyledonary node are called adventitious roots. Secondary roots may develop from seminal and adventitious roots.  Association of Official Seed Analysts (AOSA) Rules for Seed Testing, Volume 4, 2019

  • Root. A portion of a higher plant bearing neither leaves nor reproductive organs, usually underground. Fenwick, J.R. revised 1995. Laboratory Manual for General Crops- Glossary. Unpublished class notes. Dept. of Soil and Crop Sciences, Colorado State University. Pages 104-111

shoot, shoots

  • Shoot. A stem with its attached members. Fenwick, J.R. revised 1995. Laboratory Manual for General Crops- Glossary. Unpublished class notes. Dept. of Soil and Crop Sciences, Colorado State University. Pages 104-111

root, roots

  • Root. In dicotyledons and gymnosperms, the root system serves three major functions: (1) to anchor the plant in the soil, (2) to absorb water and dissolved salts from the soil and (3) to conduct the water and salts to the hypocotyl, cotyledons and epicotyl. The embryonic root, or radicle, is located at the basal end of the embryo and is usually the first seedling structure to rupture the testa. After emergence it is referred to as the primary root. The primary root elongates rapidly and soon numerous root hairs develop, greatly increasing the absorbing surface of the roots. As the seedling continues to grow, secondary roots develop from the primary root and from other secondary roots. Roots may also emerge from other structures (e.g. the hypocotyl) and are referred to as adventitious roots. As in the dicotyledons, the monocotyledon root system serves to anchor the plant in soil, absorb water and dissolved salts from the soil and to conduct the water and salts to the growing seedling. The embryonic root, or radicle, is situated at the basal end of the embryo and, in the case of the Poaceae, its apex is covered by the coleorhiza. After the radicle emerges it is referred to as the primary root. In some species of the Poaceae (e.g. Triticum) the primary root is indistinguishable from the other roots that develop from the scutellar node region and hence all of these are referred to as seminal roots. Roots that develop from structures above the scutellar or cotyledonary node are called adventitious roots. Secondary roots may develop from seminal and adventitious roots.  Association of Official Seed Analysts (AOSA) Rules for Seed Testing, Volume 4, 2019

  • Root. A portion of a higher plant bearing neither leaves nor reproductive organs, usually underground. Fenwick, J.R. revised 1995. Laboratory Manual for General Crops- Glossary. Unpublished class notes. Dept. of Soil and Crop Sciences, Colorado State University. Pages 104-111